SNP Profiles of EET400 [ECU] View Data

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_Input profile	AG	CC	TT	AC	TT	GT	CT	GG	CC	AA	TT	AA	CG	CT
1._EET_400_[ECU]	AG	CC	TT	AC	TT	GT	CT	GG	CC	AA	TT	AA	CG	CT
2._EET_400_[ECU]	AG	CC	TT	AA	TT	GT	CT	GG	CC	AA	TT	AA	CG	CT
3._GC-01-066-4-02	AG	CC	TT	AA	TT	GT	CT	GG	CC	AA	TT	AA	CG	CT
4._GC-01-066-4-02	AG	CC	TT	AA	TT	GT	CT	GG	CC	AA	TT	AA	CG	CT
5._GC-01-066-4-02	AG	CC	TT	AA	TT	GT	CT	GG	CC	AA	TT	AA	CG	CT
6._EET_400_[ECU]	AG	CC	TT	AA	TT	GT	CT	GG	CC	AA	TT	AA	CG	CT
7._EET_400_[ECU]	AG	CC	TT	AA	TT	GT	CT	GG	CC	AA	TT	AA	CG	CT
8._RUQ_760	AG	CC	TT	AC	TT	GT	CT	GG	CC	AG	TT	AA	CG	CT
9._RUQ_760	AG	CC	TT	_	_	GT	_	_	CC	AA	_	_	_	_
10._EET_400_[ECU]	AG	GG	CC	CC	TT	TT	CC	GG	CC	AG	CT	AA	CG	TT
11._GC-01-066-4-02	AA	GG	TT	_	TT	TT	CC	GG	CC	GG	TT	AA	GG	TT
12._EET_400_[ECU]	AA	GG	TT	_	TT	TT	CC	GG	CC	GG	TT	AA	GG	TT
13._GC-01-066-4-02	AA	GG	TT	_	TT	TT	CC	GG	CC	GG	TT	AA	GG	TT
14._EET_400_[ECU]	AA	GG	TT	_	TT	TT	CC	GG	CC	GG	TT	AA	GG	TT
15._GC-01-066-4-02	AA	GG	TT	_	TT	TT	CC	GG	CC	GG	TT	AA	GG	TT
16._GC-01-066-4-02	AA	GG	TT	_	TT	TT	CC	GG	CC	GG	TT	AA	GG	TT
17._GC-01-066-4-02	AA	GG	TT	_	TT	TT	CC	GG	CC	GG	TT	AA	GG	TT
18._EET_400_[ECU]	AA	GG	TT	_	TT	TT	CC	GG	CC	GG	TT	AA	GG	TT
19._EET_400_[ECU]	AA	GG	TT	_	TT	TT	CC	GG	CC	GG	TT	AA	GG	TT
20._EET_400_[ECU]	AA	GG	TT	_	TT	TT	CC	GG	CC	GG	TT	AA	GG	TT
21._MITC-000396	AA	CG	AG	AA	AG	AC	_	GG	GG	AA	AA	AT	CC	GG
22._EET_400_[ECU]_Fld#_153_Plt#_2	AA	CG	AG	CC	AA	AC	_	GG	GG	AA	AG	AT	GG	AG

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_Input profile	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG	GG	AA	CC
1._EET_400_[ECU]	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG	GG	AA	CT
2._EET_400_[ECU]	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG	GG	AA	CT
3._GC-01-066-4-02	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG	GG	AA	CT
4._GC-01-066-4-02	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG	GG	AA	CT
5._GC-01-066-4-02	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG	GG	AA	CT
6._EET_400_[ECU]	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG	GG	AA	CT
7._EET_400_[ECU]	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG	GG	AA	CT
8._RUQ_760	CT	CG	GG	AA	CT	AC	GG	GG	CT	AC	AG	GG	AA	CT
9._RUQ_760	TT	CG	GG	_	CT	AC	CG	GG	CT	AC	AG	_	AA	CT
10._EET_400_[ECU]	CC	GG	GG	AA	TT	CC	GG	TT	CC	AC	AA	GG	AA	CC
11._GC-01-066-4-02	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA	GG	AA	CC
12._EET_400_[ECU]	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA	GG	AA	CC
13._GC-01-066-4-02	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA	GG	AA	CC
14._EET_400_[ECU]	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA	GG	AA	CC
15._GC-01-066-4-02	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA	GG	AA	CC
16._GC-01-066-4-02	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA	GG	AA	CC
17._GC-01-066-4-02	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA	GG	AA	CC
18._EET_400_[ECU]	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA	GG	AA	CC
19._EET_400_[ECU]	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA	GG	AA	CC
20._EET_400_[ECU]	TT	CG	GG	AA	CC	AA	GG	TT	CC	CC	AA	GG	AA	CC
21._MITC-000396	AG	CC	CC	_	AA	AC	CG	CC	_	AC	_	AG	AA	AG
22._EET_400_[ECU]_Fld#_153_Plt#_2	AG	GG	AC	_	AG	AC	CG	CC	_	AC	_	AG	AA	AG

	29	30	31	32	33	34	35
_Input profile	AG	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._EET_400_[ECU]	AG	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._EET_400_[ECU]	AG	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-01-066-4-02	AG	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-066-4-02	AG	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-01-066-4-02	AG	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._EET_400_[ECU]	AG	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._EET_400_[ECU]	AG	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._RUQ_760	AG	CC	CT	GT	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._RUQ_760	AG	CC	CT	GT	AC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._EET_400_[ECU]	AA	AC	CT	GG	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-01-066-4-02	GG	AA	CT	GG	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._EET_400_[ECU]	GG	AA	CT	GG	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-01-066-4-02	GG	AA	_	GG	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._EET_400_[ECU]	GG	AA	_	GG	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-01-066-4-02	GG	AA	CC	GG	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-01-066-4-02	GG	AA	CC	GG	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-01-066-4-02	GG	AA	CC	GG	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._EET_400_[ECU]	GG	AA	CC	GG	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._EET_400_[ECU]	GG	AA	CC	GG	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._EET_400_[ECU]	GG	AA	CC	GG	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._MITC-000396	AG	CC	AA	AA	CC	AT	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._EET_400_[ECU]_Fld#_153_Plt#_2	AG	CC	AA	AC	AC	AA	CG	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: EET_400_[ECU]

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

1._EET_400_[ECU]

98.6 %
35 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador

Location: OCHO CASAS #1

Dapeng Zhang, 2016

2._EET_400_[ECU]

97.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 9

Dapeng Zhang, 2016

3._EET_400_[ECU] GC-01-066-4-02

97.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP3

4._EET_400_[ECU] GC-01-066-4-02

97.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

5._EET_400_[ECU] GC-01-066-4-02

97.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

6._EET_400_[ECU]

97.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 3

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._EET_400_[ECU]

97.1 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 13 > F

Dapeng Zhang, 2016

8._EET_400_[ECU] RUQ_760

97.1 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

9._EET_400_[ECU] RUQ_760

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

10._EET_400_[ECU]

70 %
35 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot85/Trial II 2B

Dapeng Zhang, 2016

11._EET_400_[ECU] GC-01-066-4-02

66.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

12._EET_400_[ECU]

66.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 5

Dapeng Zhang, 2016

13._EET_400_[ECU] GC-01-066-4-02

65.2 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10 > FP2

14._EET_400_[ECU]

65.2 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 10 > F

Dapeng Zhang, 2016

15._EET_400_[ECU] GC-01-066-4-02

64.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

16._EET_400_[ECU] GC-01-066-4-02

64.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

17._EET_400_[ECU] GC-01-066-4-02

64.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

18._EET_400_[ECU]

64.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

19._EET_400_[ECU]

64.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 7

Dapeng Zhang, 2016

20._EET_400_[ECU]

64.7 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1402 1 > FP

Dapeng Zhang, 2016

21._EET_400_[ECU] MITC-000396

41.9 %
31 shared markers

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USDA-SHRS, United States of America

22._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

41.9 %
31 shared markers

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USDA-TARS, United States of America

Location: Field: 153, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1484	2	TcSNP1458	3	TcSNP1442	4	TcSNP1350	5	TcSNP1270
6	TcSNP1253	7	TcSNP1165	8	TcSNP1062	9	TcSNP1060	10	TcSNP998
11	TcSNP994	12	TcSNP953	13	TcSNP929	14	TcSNP917	15	TcSNP891
16	TcSNP872	17	TcSNP723	18	TcSNP645	19	TcSNP619	20	TcSNP591
21	TcSNP577	22	TcSNP560	23	TcSNP534	24	TcSNP529	25	TcSNP469
26	TcSNP429	27	TcSNP372	28	TcSNP242	29	TcSNP230	30	TcSNP193
31	TcSNP151	32	TcSNP150	33	TcSNP144	34	TcSNP32	35	TcSNP25